Publicly available datasets collected at the Ellen Browning Scripps Pier. Note that additional datasets can be found via the links under Scripps Pier Observing Programs.
Water column microbial community structure from twice-weekly 16S rRNA gene sequencing, NCBI BioProject PRJNA662174. Please cite: Wilson, J., Chamberlain, E., Erazo, N., Carter, M., Bowman, J.S., 2021. Recurrent microbial community types drives by nearshore and seasonal processes in coastal Southern California. Environmental Microbiology, in press.
Mackerel microbiome, NCBI BioProject PRJEB27458. Please cite: Minich, J.J., Petrus, S., Michael, J.D., Michael, T.P., Knight, R. and Allen, E.E., 2020. Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus. Msphere, 5(3).
Eukaryotic 18S rRNA gene sequencing 2011-2012, NCBI SRA SRP132203. Please cite: Nagarkar, M., Countway, P., Yeung, D.Y., Daniels, E., Poulton, N.J., and Palenik, B., 2018. Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site. ISME J., 12, 2278-2291.
Water column microbial community structure from twice-weekly 16S rRNA gene sequencing, NCBI BioProject PRJNA662174. Please cite: Wilson, J., Chamberlain, E., Erazo, N., Carter, M., Bowman, J.S., 2021. Recurrent microbial community types drives by nearshore and seasonal processes in coastal Southern California. Environmental Microbiology, in press.
Mackerel microbiome, NCBI BioProject PRJEB27458. Please cite: Minich, J.J., Petrus, S., Michael, J.D., Michael, T.P., Knight, R. and Allen, E.E., 2020. Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus. Msphere, 5(3).
Eukaryotic 18S rRNA gene sequencing 2011-2012, NCBI SRA SRP132203. Please cite: Nagarkar, M., Countway, P., Yeung, D.Y., Daniels, E., Poulton, N.J., and Palenik, B., 2018. Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site. ISME J., 12, 2278-2291.